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2011 - C1 Refereed journal articles

M Cao, T Dix and L Allison: A biological compression model and its applications, Advances In Experimental Medicine And Biology, vol 696, Springer-Verlag Berlin, Berlin Germany, pp. 657-666. (C).

2010 - C1 Refereed journal articles

M D Cao, T I Dix and L Allison: A genome alignment algorithm based on compression, BMC Bioinformatics [P], vol 11, BMC Bioinformatics, BioMed Central Ltd, pp. 1-16. (A).

2009 - E1 Full written paper - refereed

J C Bernal, T I Dix, L Allison, A Bartholomeusz and L Yuen: Modelling Hepatitis B virus antiviral therapy and drug resistant mutant strains, Artificial Life: Borrowing from Biology, 1 December 2009 to 4 December 2009, Springer-Verlag, Berlin Germany, pp. 159-168 (ERA Rank: B).

M D Cao, L Allison and T I Dix: A distance measure for genome phylogenetic analysis, Proceedings of the 22nd Australasian Joint Conference AI 2009: Advances in Artificial Intelligence, 1 December 2009 to 4 December 2009, Springer-Verlag, Berlin Germany, pp. 71-80 (ERA Rank: B).

M D Cao, T I Dix and L Allison: Computing substitution matrices for genomic comparative analysis, Proceedings of the 13th Pacific-Asia Conference on Advances in Knowledge Discovery and Data Mining (PAKDD 2009), 27 April 2009 to 30 April 2009, Springer-Verlag, Berlin Germany, pp. 647-655 (ERA Rank: A).

2009 - Technical reports

M D Cao, T I Dix and L Allison: A Genome Alignment Algorithm Based on Compression, Clayton School of Information Technology, Monash University, 11 pp. Please contact authors for a copy of the full report.. Technical report 2009/233. Abstract available.

2007 - C1 Refereed journal articles

T I Dix, D R Powell, L Allison, J C Bernal Melo, S Jaeger and L Stern: Comparative analysis of long DNA sequences by per element information content using different contexts, BMC Bioinformatics, vol 8, issue 2, BioMed Central Ltd, London England UK, pp. 1-7.

P J Tan, D L Dowe and T I Dix: Building classification models from microarray data with tree-based classification algorithms, Lecture Notes in Artificial Intelligence, vol 4830, Springer, Germany, pp. 589-598.

2007 - E1 Full written paper - refereed

M D Cao, T I Dix, L Allison, C D Mears: A simple statistical algorithm for biological sequence compression, Proceedings of the Data Compression Conference 2007, 27 March 2007 to 29 March 2009, IEEE Computer Society Press, Los Alamitos CA USA, pp. 43-52.

2006 - E1 Full written paper - refereed

R Myers, T I Dix, R L Coppel, D G Green: Polynome: A learning system for extracting bioinformatic data, Proceedings of the 2006 international conference on bioinformatics and computational biology (BIOCOMP'06), 26 June 2006 to 29 June 2006, CSREA Press, USA, pp. 534-540.

R Ram, M R Chetty, T I Dix: Causal modeling of gene regulatory network, Proceedings of the 2006 IEEE Symposium on Computational Intelligence in Bioinformatics and Computational Biology, 28 September 2006 to 29 September 2006, IEEE Service Center, Piscataway NJ USA, pp. 132-139.

R Ram, M R Chetty, T I Dix: Fuzzy model for gene regulatory network, IEEE World Congress on Computational Intelligence: 2006 IEEE Congress on Evolutionary Computation, 16 July 2006 to 21 July 2006, Omnipress Technical Support, WI USA.

2006 - Technical reports

M D Cao, T I Dix, L Allison and C Mears: A Fast Statistical Biological Sequence Compressor for Pattern Discovery, Clayton School of Information Technology, Monash University, Melbourne, 15pp. Technical report 2006/203. Abstract available.

2006 - E2 Full written paper -not refereed

T Dix, D Powell, L Allison, S Jaeger, J Bernal and L Stern: Exploring long DNA sequence by information content, Proceedings of the Probabilistic Modeling and Machine Learning in Structural and Systems Biology Workshop, 17 June 2006 to 18 June 2006, Helsinki University Printing House, Helsinki Finland, pp. 97-102.

2005 - E1 Full written paper - refereed

B Myers, T I Dix, R Coppel and D G Green: Database Integration and Querying in the Bioinformatics Domain, in F Frasincar, Geert-Jan Houben and R Vdovjak (eds), Proceedings of the Web Information Systems Modeling Workshop (WISM 2005), Sydney, NSW, Australia, 25 - 29 July 2005, University of Wollongong, Wollongong, NSW, Australia, ISBN: 1 74128 103 2, pp 14-20.

2004 - C1 Refereed journal articles

D R Powell, L Allison and T I Dix: Modelling-Alignment for Non-random Sequences, in G I Webb and X Yu (eds). Lecture Notes in Artificial Intelligence, (Proceedings of the 17th Australian Joint Conference on Advances in Artificial Intelligence [AI'04], Cairns, Australia, 4-6 December 2004), Springer-Verlag, Berlin, Germany, ISSN: 0302-9743 & ISBN: 3-540-24059-4, Vol 3339, pp 203-214.

2001 - C1 Refereed journal articles

L Stern, L Allison, R L Coppel and T I Dix: Discovering Patterns in Plasmodium Falciparum Genomic DNA, Journal of Molecular & Biochemical Parasitology, Elsevier Science BV, Amsterdam, The Netherlands, ISSN: 0166-6851, Vol 118, Issue 2, pp 175-186.

2000 - C1 Refereed journal articles

L Allison, L Stern, T Edgoose and T I Dix: Sequence complexity for biological sequence analysis, in J Crabbe (ed), Journal of Computers and Chemistry - Chemistry, Biochemistry, Molecular Biology, Elsevier Science, Oxford, UK, ISSN: 0097-8485, Vol 24, Issue 1, 2000, pp 43-55.

D R Powell, L Allison and T I Dix: Fast, optimal alignment of three sequences using linear gap costs, Journal of Theoretical Biology, December, 2000, Academic Press Ltd, London, UK, Vol 207, Issue 3, ISSN: 0022-5193, pp 325-336.

2000 - Technical reports

L Allison, D Powell and T I Dix: Modelling is more versatile than shuffling, School of Computer Science and Software Engineering, Monash University, Melbourne, 9pp. Technical report 2000/83. Abstract available.

1999 - C1 Refereed journal articles

L Allison, D Powell and T I Dix: Compression and approximate matching, The Computer Journal, Oxford University Press, UK, ISSN: 0010-4620, Vol 42, No 1, 1999, 1-10.

D R Powell, L Allison and T I Dix: A versatile divide and conquer technique for optimal string alignment, Information Processing Letters, Vol 70, Elsevier Science, Amsterdam, The Netherlands, ISSN: 0020-0190, May, 1999, 127-139.

1998 - E1 Full written paper - refereed

L Allison, T Edgoose and T I Dix: Compression of strings with approximate repeats, in J Glasgow, T Littlejohn, F Major, R Lathrop, D Sankoff and C Sensen (eds) Proceedings of the Sixth International Conference on Intelligent Systems for Molecular Biology (ISMB-98) Montreal, Quebec, Canada, 28 June - 1 July 1998, AAAI Press, CA, USA, ISBN: 0-1-57735-053-7, 8-16.

T H MacKenzie and T I Dix: Object-oriented ease-based parallel primitives in C++, in C M Huang and C S Yang (eds), Proceedings of the 1998 International Conference on Parallel and Distributed Systems (ICPADS '98), Tainan, Taiwan, 14-16 December 1998, IEEE Service Center, NJ, USA, ISBN: 0-8186-8603-0 and ISSN: 1521-9097, 623-630.

K E Macphee and T I Dix: A framework for dynamic checks of C arrays via a C++ class, in D D Grant (ed), Proceedings of the Eleventh Australian Software Engineering Conference (ASWEC-98), 9-13 November, 1998, Adelaide, Australia, IEEE Services Center, NJ, USA, ISBN: 0-8186-9187-5, 57-65.

D R Powell, L Allison, T I Dix and D L Dowe: Alignment of low information sequences, in X Lin (ed) Australian Computer Science Communications, Computing Theory '98, Proceedings of the Fourth Australasian Theory Symposium (CATS '98) Perth, Australia, 2-3 February 1998, Springer-Verlag, Singapore, ISBN: 98103083-92-1, 20: 3: 215-229.

1997 - C1 Refereed journal articles

D M Platt and T I Dix: Comparison of clone-ordering algorithms used in physical mapping, Genomics, Academic Press, Orlando FL USA, 490-492, 3pp.

C N Yee and T I Dix: A platform for restriction mapping, The Journal of Logic Programming, Elsevier Science Inc, New York NY USA, 81-99, 19pp.

1997 - E1 Full written paper - refereed

K E Macphee and T I Dix: Constructing a generic C++ class for customised C pointers, Australian Computer Science Communications - ACSC'97 Proceedings of the Twentieth Australasian Computer Science Conference, Australian Computer Science Society, Melbourne Australia, 451-461, 11pp.

D R Powell, D L Dowe, L Allison and T I Dix: Discovering simple DNA sequences by compression, Pacific Symposium on Biocomputing '98, World Scientific Publishing, Singapore, 597-608, 12pp.

1996 - Technical reports

D M Platt and T I Dix: Clone ordering using restriction fingerprinting data, 96/287, Dept Computer Science Technical Reports, Dept Computer Science, Monash Univ, Melbourne Australia, 1-21, 21pp. Technical report CS 96/287. Abstract available.

1995 - E1 Full written paper - refereed

D L Dowe, L Allison, T I Dix, L Hunter, C S Wallace and T Edgoose: Circular clustering of protein dihedral angles by Minimum Message Length, Pacific symposium on biocomputing '96 (PSB-1), Hawaii, U.S.A, 3-6 January 1996, World Scientific, Singapore, ISBN: 981-02-2578-4, 242-255, 1995.

D M Platt and T I Dix: A model for comparing genomic restriction maps, Proceedings of the twenty-eighth annual Hawaii international conference on systems science IEEE Computer Society Press, Hawaii, 24-31, 1995.

D M Platt and T I Dix: Stochastic assembly of Contig restriction maps, Proceedings of the twenty-eighth annual Hawaii int conf on system sciences IEEE Computer Society Press, Hawaii, 155-64, 1995.

1995 - Technical reports

D L Dowe, L Allison, T I Dix, L Hunter, C S Wallace and T Edgoose: Circular clustering by Minimum Message Length of protein dihedral angles, (Technical report 95/237) Dept Computer Science, Monash University, Melbourne, 14pp, 1995. Technical report CS 95/237. Abstract available.

K E Macphee and T I Dix: Generic C++ classes for customised C pointers, (Technical report 95/243) Dept Computer Science, Monash University, Melbourne, 29pp, 1995. Technical report CS 95/243. Abstract available.

C N Yee and T I Dix: A platform for restriction mapping, (Technical report 95/241) Dept Computer Science, Monash University, Melbourne, 17pp, 1995. Technical report CS 95/241. Abstract available.

1995 - Other publications

T I Dix: Restriction mapping of genomic data with a CLP based engine, in K Marriott (ed) Constraint Programming Day Department of Computer Science, Monash University, Melbourne, 16, 1995.

1994 - E1 Full written paper - refereed

T I Dix and C N Yee: A restriction mapping engine using constraint logic programming, Second int conf on intelligent systems for molecular biology AAAI Press, California, USA, 112-20, 1994.

T MacKenzie and T I Dix: A distributed memory multiprocessor implementation of C-with-Ease, 1994 int conf on parallel and distributed systems Hsinchu, Taiwan, 250-7, 1994.

1994 - Technical reports

D M Platt and T I Dix: Stochastic assembly of genomic restriction maps, (Technical report 94/210) Dept Computer Science, Monash University, Melbourne, 14pp, 1994. Technical report CS 94/210. Abstract available.

1994 - Other publications

T I Dix and L Allison: Computational techniques for assembling genomic data, (abstract) in C S Wallace (ed) Research conference: Faculty of Computing & Information Technology, Monash University Melbourne, 7, 1994 .

D M Platt and T I Dix: A stochastic method for contig map assembly, Second international conference on intelligent systems for molecular biology, Stanford University, Palo Alto, California, USA, 1, 1994.

1993 - E1 Full written paper - refereed

T I Dix and T T Lien: Safe-C for introductory undergraduate programming, Proc. sixteenth Aust. computer science conf. Brisbane, 15, 1, 371-8, 1993.

D L Dowe, J J Oliver, T I Dix, L Allison and C S Wallace: A decision graph explanation of protein secondary structure prediction, Proc. twenty-sixth annual Hawaii int. conf. on system sciences Hawaii, 1, 669-78, 1993.

T MacKenzie and T I Dix: A distributed implementation of, C-with-Ease' Proc. sixteenth Aust. computer science conf. Brisbane, 15, 1, 407-12, 1993.

T MacKenzie, D M Platt and T I Dix: Modelling errors in restriction mapping, Proc. twenty-sixth annual Hawaii int. conf. on system sciences Hawaii, 1, 613-9, 1993.

D M Platt and T I Dix: Construction of restriction maps using a genetic algorithm, Proc. twenty-sixth annual Hawaii int. conf. on system sciences Hawaii, 1, 756-62, 1993.

1992 - E1 Full written paper - refereed

T I Dix and C J Ho-Stuart: Constraint checking for circular restriction site mapping, Proc. twenty-fifth Hawaii int. conf. on system sciences Kauai, Hawaii, 1, 635-42, 1992.

D L Dowe, J Oliver, L Allison, T I Dix and C S Wallace: Learning rules for protein secondary structure prediction, Dept. res. conf., Comp. Sci. Dept., UWA University of Western Australia, 1-12, 1992.

1992 - Technical reports

D L Dowe, J Oliver, L Allison, C S Wallace and T I Dix: A decision graph explanation of protein secondary structure prediction, (Technical report 92/163) Dept Computer Science, Monash University, Melbourne, 13pp, 1992. Technical report CS 92/163. Abstract available.

T MacKenzie and T I Dix: A distributed implementation of C-with-ease, (Technical report 92/167) Dept Computer Science, Monash University, Melbourne, 10pp, 1992. Technical report CS 92/167. Abstract available.

1991 - C1 Refereed journal articles

L Allison, T I Dix and C N Yee: Shortest path and closure algorithms for banded matrices, Information Processing Letters 40, 317-22, 1991.

1991 - E1 Full written paper - refereed

T I Dix: Closing the gap in restriction site mapping, Proc. 1991 Computer Science Research Conf., Univ. of Western Australia, Perth, 1-12, 1991.

S T S Ho, L Allison, C N Yee and T I Dix: Constraint checking for restriction site mapping, Proc. Twenty-fourth Annual Hawaii Int. Conf. on System Science, Hawaii, 1, 605-14, 1991.

1990 - E1 Full written paper - refereed

T I Dix, D H Kieronska and P H Foong: Assistance in restriction site mapping, Working notes, AAAI Spring symp. series, Stanford University, 33-6, 1990.


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