Reference:
Arun S. Konagurthu, James C. Whisstock, Peter J. Stuckey, Arthur M. Lesk MUSTANG: A multiple structural alignment algorithm. Proteins: Structure, Function, and Bioinformatics. 64(3):559-574, August 2006.
Reference:
Arun S. Konagurthu, James C. Whisstock, Peter J. Stuckey, Arthur M. Lesk MUSTANG: A multiple structural alignment algorithm. Proteins: Structure, Function, and Bioinformatics. 64(3):559-574, August 2006.
Click to download MUSTANG (v3.2.1) (md5sum: 5abf30539fe3dae9fc958df168bce465)
Click here to download a patch to our previous version -- v3.2
Instructions to install MUSTANG:
Extract using: tar -zxvf mustang_v3.2.1.tgz
then, cd MUSTANG_v3.2.1
run make(or gmake)
Test the installation using: ./bin/mustang-3.2.1 -f ./data/test/test_zf-CCHH
This should produce the following files:
results.html
results.pdb
For details of the command line options, type: ./bin/mustang.3.2.1 --help
Click here to grab a copy of our paper describing MUSTANG algorithm
Click here for the Supplementary material supporting the results in the manuscript
See Also:
SST: A method to assign secondary structures to protein coordinate data using the Bayesian method of Minimum Message Length (MML) inference: Visit SST web server to submit your jobs.
Super: A server to rapidly screen the entire PDB and identify superposable (contiguous) oligopeptide fragments. Using a method to compute a lower bound on RMSD of orthogonal superposition, Super guarantees to return all superposable fragments within any user-specified threshold of RMSD: http://lcb.infotech.monash.edu.au/super/
MUSTANG-MR Structural Sieving Server: A novel structural sieving server useful in building phase-search models for Structure determination using crystallographic Molecular Replacement.
TableauSearch: A protein structural search server (hosted at Penn State), which uses the novel Tableau representation of protein folding patterns to rapidly search for substructural similarities in the entire structural databases.