Arun  S.  konagurthu
अरुण सिद्धार्थ कोनगुर्तुhttp://en.wikipedia.org/wiki/Devanagari
అరుణ్ సిద్ధార్థ కొనగుర్తు http://en.wikipedia.org/wiki/Telugu_alphabet
 
mustang: a multiple structural alignment algorithm

Reference:

Arun S. Konagurthu, James C. Whisstock, Peter J. Stuckey, Arthur M. Lesk MUSTANG: A multiple structural alignment algorithm. Proteins: Structure, Function, and Bioinformatics.   64(3):559-574, August 2006.

  1. Bullet Click to download MUSTANG (v3.2.1) (md5sum: 5abf30539fe3dae9fc958df168bce465)

  2. Bullet Click here to download a patch to our previous version -- v3.2


Instructions to install MUSTANG:

  1. Bullet Extract using: tar -zxvf mustang_v3.2.1.tgz

  2. Bullet then, cd MUSTANG_v3.2.1

  3. Bullet run make(or gmake)

  4. Bullet Test the installation using: ./bin/mustang-3.2.1 -f ./data/test/test_zf-CCHH

  5. Bullet This should produce the following files:

  6. Bullet results.html

  7. Bullet results.pdb


For details of the command line options, type:  ./bin/mustang.3.2.1 --help

Click here to grab a copy of our paper describing MUSTANG algorithm

Click here for the Supplementary material supporting the results in the manuscript           

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See Also:

SST: A method to assign secondary structures to protein coordinate data using the Bayesian method of Minimum Message Length (MML) inference: Visit SST web server to submit your jobs.

Super: A server to rapidly screen the entire PDB and identify superposable (contiguous) oligopeptide fragments. Using a method to compute a lower bound on RMSD of orthogonal superposition, Super guarantees to return all superposable fragments within any user-specified threshold of RMSD: http://lcb.infotech.monash.edu.au/super/


MUSTANG-MR Structural Sieving Server: A novel structural sieving server useful in building  phase-search models for Structure determination using crystallographic Molecular Replacement.


TableauSearch: A protein structural search server (hosted at Penn State), which uses the novel Tableau representation of protein folding patterns to rapidly search for substructural similarities in the entire structural databases.